STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM54573.1Beta-carotene 3-hydroxylase. (146 aa)    
Predicted Functional Partners:
SHM54539.1
Phytoene/squalene synthetase.
 
 0.982
SHL32926.1
Lycopene beta-cyclase.
 
  
 0.933
SHM54511.1
Phytoene desaturase.
 
   
 0.928
SHM03543.1
Protein of unknown function.
   
 0.723
SHM54613.1
Ligand-binding SRPBCC domain-containing protein.
 
     0.679
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 0.642
SHL75836.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.642
SHM84276.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.642
SHM34680.1
Hypothetical protein.
   
 0.608
SHM54481.1
B12 binding domain-containing protein.
       0.604
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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