STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM57017.1Hypothetical protein. (130 aa)    
Predicted Functional Partners:
SHM56987.1
Branched-chain amino acid aminotransferase.
 
     0.822
SHM56749.1
Protein of unknown function.
  
     0.754
SHL26244.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.743
SHM16759.1
pRiA4b ORF-3-like protein.
  
     0.731
SHM88377.1
Outer membrane lipoprotein-sorting protein.
  
     0.710
SHM43817.1
Protein of unknown function.
 
     0.680
SHL28786.1
Hypothetical protein.
  
     0.664
SHM74849.1
Protein involved in gliding motility GldN.
  
     0.651
SHM74826.1
Gliding motility associated protien GldN.
  
     0.647
SHL49207.1
Rod shape-determining protein MreD.
  
     0.595
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
Server load: medium (56%) [HD]