STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM58354.1Por secretion system C-terminal sorting domain-containing protein. (1281 aa)    
Predicted Functional Partners:
SHM38719.1
Signal transduction histidine kinase.
   
 0.890
SHL80249.1
Hypothetical protein.
   
 0.838
SHM13135.1
Hpt domain-containing protein.
   
 0.776
SHL69625.1
Hypothetical protein.
   
 
 0.769
SHM11017.1
PAS domain S-box-containing protein.
    
 0.764
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.716
SHL79452.1
Signal transduction histidine kinase.
    
 0.691
SHM31122.1
Signal transduction histidine kinase.
    
 0.659
SHM32495.1
Signal transduction histidine kinase.
    
 0.659
SHM36577.1
Two component regulator propeller.
    
 0.659
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.