STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM61540.1Lipopolysaccharide transport system ATP-binding protein. (423 aa)    
Predicted Functional Partners:
SHM61570.1
Lipopolysaccharide transport system permease protein.
 
 0.999
SHM61424.1
Hypothetical protein.
  
    0.822
SHM62351.1
Protein involved in gliding motility EpsA.
 
  
 0.803
SHM61392.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.795
SHM61510.1
WbqC-like protein family protein.
       0.793
SHM61454.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
       0.786
SHM61484.1
Methyltransferase domain-containing protein.
       0.785
SHM61363.1
4-alpha-L-fucosyltransferase glycosyl transferase group 56.
       0.777
SHM62128.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
  
 0.668
SHL29532.1
comF family protein; Manually curated.
   
    0.665
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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