STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM64996.1Amidohydrolase family protein. (505 aa)    
Predicted Functional Partners:
SHM55307.1
Hypothetical protein.
  
 
 0.644
SHM72953.1
Hypothetical protein.
  
 
 0.644
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.644
SHL38654.1
Histidine ammonia-lyase.
  
  
 0.583
SHL86266.1
Histidine ammonia-lyase.
  
  
 0.583
SHM09607.1
Peptidase family M28.
  
     0.471
SHM04881.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.454
SHM52136.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.446
SHL41111.1
Uncharacterized protein.
  
     0.433
SHL66578.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.427
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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