STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM78306.1LytTr DNA-binding domain-containing protein. (134 aa)    
Predicted Functional Partners:
SHM38719.1
Signal transduction histidine kinase.
    
 0.681
SHL80249.1
Hypothetical protein.
    
 0.661
SHL79452.1
Signal transduction histidine kinase.
    
 0.657
SHM78276.1
[acyl-carrier-protein] S-malonyltransferase.
       0.572
SHM31122.1
Signal transduction histidine kinase.
    
  0.559
SHM32495.1
Signal transduction histidine kinase.
    
  0.559
SHM36577.1
Two component regulator propeller.
    
  0.559
SHM74508.1
Signal transduction histidine kinase.
    
  0.559
SHM78338.1
Hypothetical protein.
  
    0.517
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.435
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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