STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM80683.1WD40-like Beta Propeller Repeat. (666 aa)    
Predicted Functional Partners:
SHM80708.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.941
SHM01930.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.770
SHL83454.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.759
SHL73064.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.749
SHM80731.1
Gliding motility-associated C-terminal domain-containing protein.
 
  
  0.721
SHM80594.1
Protein involved in gliding motility SprA.
 
     0.672
SHM84590.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.670
SHL36708.1
Protein involved in gliding motility SprE.
  
 
   0.666
SHM83575.1
Hypothetical protein.
 
 
0.631
SHM85033.1
Tetratricopeptide repeat-containing protein.
 
 
 0.630
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.