STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM83772.1Transcriptional regulator, AraC family. (183 aa)    
Predicted Functional Partners:
SHM83791.1
Response regulator receiver domain-containing protein.
 
    0.821
SHM83808.1
Hypothetical protein.
 
    0.799
SHM38719.1
Signal transduction histidine kinase.
    
 0.702
SHM34343.1
Transcriptional regulator, AraC family.
  
     0.515
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.495
SHM83753.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
       0.469
SHL80362.1
Hypothetical protein.
  
     0.427
SHM83739.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
 
    0.425
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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