STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM87092.1L-alanine-DL-glutamate epimerase. (336 aa)    
Predicted Functional Partners:
SHM87116.1
7-keto-8-aminopelargonate synthetase.
 
     0.869
SHM87069.1
Predicted hydrolase of the alpha/beta superfamily.
       0.694
SHM87043.1
Hypothetical protein.
       0.503
SHL52918.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
     0.484
SHM87137.1
Protein of unknown function.
       0.471
SHM12483.1
O-succinylbenzoic acid--CoA ligase.
 
 
  0.442
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.