STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvbKPutative N-acetyltransferase YvbK. (158 aa)    
Predicted Functional Partners:
FLB_06850
Aminoalkylphosphonic acid N-acetyltransferase.
 
      0.819
tsaE
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
   
   0.634
ald2_1
Alanine dehydrogenase 2.
       0.558
yfiT
Putative metal-dependent hydrolase YfiT.
 
  
  0.538
FLB_00510
Hypothetical protein.
       0.481
FLB_16470
Acetyltransferase (GNAT) family protein.
 
  
  0.444
FLB_19080
FR47-like protein.
  
  
  0.426
dapE
Succinyl-diaminopimelate desuccinylase.
  
 
 0.415
metX
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
     
 0.415
thrA_2
Bifunctional aspartokinase/homoserine dehydrogenase 1.
     
 0.415
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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