STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldhLeucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (367 aa)    
Predicted Functional Partners:
gltB_2
Ferredoxin-dependent glutamate synthase 1.
  
 0.999
bkdA2
2-oxoisovalerate dehydrogenase subunit beta.
  
 
 0.939
ilvK
Branched-chain-amino-acid aminotransferase 2; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.902
pabC
Aminodeoxychorismate lyase.
  
 
 0.894
gcvP
Glycine dehydrogenase; Belongs to the GcvP family.
   
 0.737
cobB
NAD-dependent protein deacylase; Belongs to the sirtuin family. Class III subfamily.
    
 0.683
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.662
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
   
 
 0.625
gltB_1
Glutamate synthase [NADPH] small chain.
  
 0.622
yheI
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI.
   
 
 0.598
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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