STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpA_1Prolyl tripeptidyl peptidase precursor. (785 aa)    
Predicted Functional Partners:
FLB_02780
Hypothetical protein.
       0.773
pncC
Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.
  
 
  0.671
yigL
Pyridoxal phosphate phosphatase YigL.
       0.639
FLB_09050
Zinc carboxypeptidase.
  
     0.609
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
       0.551
ptpA_2
Prolyl tripeptidyl peptidase precursor.
  
     0.541
susC_11
TonB-dependent receptor SusC precursor.
  
     0.522
FLB_15590
SusD family protein.
  
     0.457
ybeZ
PhoH-like protein.
       0.443
FLB_08790
D-hydantoinase.
  
     0.412
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.