STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapLLL-diaminopimelate aminotransferase. (381 aa)    
Predicted Functional Partners:
FLB_03220
Prephenate dehydrogenase.
 
  
 0.948
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 0.925
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Belongs to the DapB family.
    
 0.902
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
    
 0.901
pheA
P-protein.
 
 0.892
metX
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
  
 0.859
thrA_2
Bifunctional aspartokinase/homoserine dehydrogenase 1.
  
 0.859
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.827
aroF
Phospho-2-dehydro-3-deoxyheptonate aldolase.
  
 
 0.826
thrA_1
Bifunctional aspartokinase/homoserine dehydrogenase 1.
 
 0.789
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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