Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FLB_03330SusD family protein. (464 aa)    
Predicted Functional Partners:
susC_2
TonB-dependent receptor SusC precursor.
 
     0.946
ptpA_2
Prolyl tripeptidyl peptidase precursor.
 
     0.852
susC_23
TonB-dependent receptor SusC precursor.
 
 
   0.808
FLB_03360
Methylamine utilization protein MauE.
  
     0.775
susC_22
TonB-dependent receptor SusC precursor.
 
 
   0.753
FLB_03400
RteC protein.
  
     0.746
susC_17
TonB-dependent receptor SusC precursor.
 
 
   0.740
FLB_07040
Hypothetical protein.
  
 
   0.712
bioF_2
8-amino-7-oxononanoate synthase.
  
     0.690
FLB_12180
RteC protein.
  
     0.682
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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