STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arlSSignal transduction histidine-protein kinase ArlS. (453 aa)    
Predicted Functional Partners:
copR
Transcriptional activator protein CopR.
 
  0.978
rpfC_2
Sensory/regulatory protein RpfC.
 
0.970
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.931
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 0.906
yycF_1
Transcriptional regulatory protein YycF.
  
  0.840
FLB_03900
Outer membrane efflux protein.
 
     0.822
barA
Signal transduction histidine-protein kinase BarA.
 
 0.792
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
  0.779
cph1
Phytochrome-like protein cph1.
 
 0.762
rpfC_1
Sensory/regulatory protein RpfC.
 
 
 0.760
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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