STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLB_04890Hypothetical protein. (186 aa)    
Predicted Functional Partners:
parB
Putative chromosome-partitioning protein ParB; Belongs to the ParB family.
       0.819
soj_1
Sporulation initiation inhibitor protein Soj.
       0.803
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.770
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Belongs to the DapB family.
       0.757
lptD_2
LPS-assembly protein LptD.
  
    0.729
FLB_04800
Tetratricopeptide repeat protein.
  
     0.705
FLB_03790
Hypothetical protein.
  
     0.699
FLB_04860
WbqC-like protein family protein.
 
     0.685
FLB_27360
Hypothetical protein.
  
    0.679
lptD_1
LPS-assembly protein LptD.
  
    0.666
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.