STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bauABeta-alanine--pyruvate aminotransferase. (445 aa)    
Predicted Functional Partners:
FLB_09290
Hypothetical protein.
 
      0.887
bioD1
ATP-dependent dethiobiotin synthetase BioD 1; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
 
 0.871
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.813
gltB_2
Ferredoxin-dependent glutamate synthase 1.
     
 0.757
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.746
iolA
Methylmalonate semialdehyde dehydrogenase.
  
 0.721
metX
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
    
 0.717
thrA_2
Bifunctional aspartokinase/homoserine dehydrogenase 1.
    
 0.717
thrA_1
Bifunctional aspartokinase/homoserine dehydrogenase 1.
    
 0.714
gcvP
Glycine dehydrogenase; Belongs to the GcvP family.
    
 0.700
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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