STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gbsABetaine aldehyde dehydrogenase. (113 aa)    
Predicted Functional Partners:
betB
NAD/NADP-dependent betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
  0.867
rocA_1
1-pyrroline-5-carboxylate dehydrogenase.
 
     0.813
gltB_2
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.798
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
   
 0.786
alkH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
  0.772
fumB
Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
   
 
 0.724
maeB
NADP-dependent malic enzyme.
  
 
 0.724
deoC1
Deoxyribose-phosphate aldolase 1.
  
 0.689
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.684
sad
Succinate semialdehyde dehydrogenase Sad.
 
    
0.679
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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