STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraR_1Transcriptional regulatory protein ZraR. (387 aa)    
Predicted Functional Partners:
zraS_3
Sensor protein ZraS.
 0.966
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 0.912
rpfC_2
Sensory/regulatory protein RpfC.
 
 0.907
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
0.888
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.834
fixL
Sensor protein FixL.
 
 0.785
barA
Signal transduction histidine-protein kinase BarA.
 
 
 0.734
FLB_08410
Hypothetical protein.
  
 0.727
rpfC_1
Sensory/regulatory protein RpfC.
 0.688
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
0.641
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.