STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLB_08050Hypothetical protein. (651 aa)    
Predicted Functional Partners:
bamA_3
Outer membrane protein assembly factor BamA.
  
 
   0.758
FLB_27080
Hypothetical protein.
  
 
 
 0.716
FLB_19590
PD-(D/E)XK nuclease superfamily protein.
  
     0.666
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
      0.663
FLB_00400
Hypothetical protein.
  
     0.656
addA
ATP-dependent helicase/nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
  
     0.634
FLB_27350
Hypothetical protein.
  
     0.620
FLB_22040
Sporulation related domain protein.
  
 
 0.611
FLB_27420
Hypothetical protein.
  
     0.604
nusA
Hypothetical protein; Participates in both transcription termination and antitermination.
  
    0.593
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.