STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLB_09560Ureidoglycolate lyase. (284 aa)    
Predicted Functional Partners:
FLB_09530
2-keto-3-deoxy-L-fuconate dehydrogenase.
 0.934
fumB
Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.771
hmgA
Homogentisate 1,2-dioxygenase.
  
  
 0.742
cpnA_1
Cyclopentanol dehydrogenase.
 0.719
glpC
Anaerobic glycerol-3-phosphate dehydrogenase subunit C.
  
 
  0.618
FLB_22420
Putative FAD-linked oxidoreductase.
  
 
  0.618
FLB_22430
Sn-glycerol-3-phosphate dehydrogenase subunit C.
  
 
  0.618
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
   
 0.592
linC
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.592
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
   
 0.592
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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