STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exo-3Beta-hexosaminidase. (690 aa)    
Predicted Functional Partners:
chiA1
Chitinase A1 precursor.
 
  
 0.885
nagB_1
Glucosamine-6-phosphate deaminase 1.
 
   
 0.750
lacZ
Beta-galactosidase.
 
 0.640
FLB_10170
TonB-dependent receptor plug domain protein.
 
   
 0.580
hutH
Histidine ammonia-lyase.
   
    0.559
cutC
Copper homeostasis protein CutC.
 
     0.521
nagB_2
Glucosamine-6-phosphate deaminase 1.
 
   
 0.510
nagB_3
Glucosamine-6-phosphate deaminase 1.
 
   
 0.509
yehU
Sensor histidine kinase YehU.
 
   
 0.505
FLB_10180
Susd and RagB outer membrane lipoprotein.
 
     0.465
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.