STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLB_10320Fec operon regulator FecR. (391 aa)    
Predicted Functional Partners:
fliA
RNA polymerase sigma factor FliA; Belongs to the sigma-70 factor family. ECF subfamily.
 
  0.844
rpoE_4
ECF RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.722
FLB_01310
RNA polymerase sigma factor.
 
  0.702
FLB_15050
SusD family protein.
  
     0.666
susC_16
TonB-dependent receptor SusC precursor.
  
    0.596
yydK
Putative HTH-type transcriptional regulator YydK.
  
     0.591
susC_10
TonB-dependent receptor SusC precursor.
  
    0.571
FLB_10340
Starch-binding associating with outer membrane.
 
     0.565
bfrD
Putative TonB-dependent receptor BfrD precursor.
  
 
 0.544
cirA_2
Colicin I receptor precursor.
  
 
 0.544
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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