STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLB_13010Putative pyridoxal phosphate-dependent acyltransferase. (444 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; Belongs to the GcvP family.
  
 
 0.928
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
  
  
 
0.911
ltaA
L-allo-threonine aldolase.
     
 0.895
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.867
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.781
FLB_22250
Putative epimerase/dehydratase.
  
 
  0.771
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.747
bioF_2
8-amino-7-oxononanoate synthase.
  
  
 
0.733
bioD1
ATP-dependent dethiobiotin synthetase BioD 1; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
 
 0.721
FLB_01330
Methyltransferase domain protein.
  
 
 0.649
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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