STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheBChemotaxis response regulator protein-glutamate methylesterase. (130 aa)    
Predicted Functional Partners:
yehU
Sensor histidine kinase YehU.
 
  0.870
ypdA_1
Sensor histidine kinase YpdA.
  
  0.856
ypdA_2
Sensor histidine kinase YpdA.
  
  0.843
lytR_3
Sensory transduction protein LytR.
  
  
  0.828
lytR_2
Sensory transduction protein LytR.
  
  
  0.824
ypdB_1
Transcriptional regulatory protein YpdB.
  
  
  0.820
yehT
Transcriptional regulatory protein YehT.
  
     0.768
rpfC_2
Sensory/regulatory protein RpfC.
    
 0.719
ypdB_2
Transcriptional regulatory protein YpdB.
  
  
  0.608
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 0.541
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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