STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
susC_10TonB-dependent receptor SusC precursor. (1079 aa)    
Predicted Functional Partners:
FLB_15050
SusD family protein.
     0.940
FLB_22510
SusD family protein.
  
     0.748
susD_2
Starch-binding protein SusD precursor.
  
     0.677
yydK
Putative HTH-type transcriptional regulator YydK.
  
   
 0.654
FLB_01300
FecR protein.
  
    0.641
FLB_22530
Fec operon regulator FecR.
  
    0.612
FLB_07040
Hypothetical protein.
  
    0.603
susD_1
Starch-binding protein SusD precursor.
 
   
 0.584
FLB_17240
Gram-negative bacterial tonB protein.
  
   0.582
FLB_03020
Gram-negative bacterial tonB protein.
  
   0.573
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.