STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rafAAlpha-galactosidase. (732 aa)    
Predicted Functional Partners:
mro
Aldose 1-epimerase precursor.
  
 
  0.887
lacZ
Beta-galactosidase.
 
 
 0.806
galK
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.786
FLB_16740
Alpha-xylosidase BoGH31A precursor; Belongs to the glycosyl hydrolase 31 family.
    
 0.700
yydK
Putative HTH-type transcriptional regulator YydK.
  
 
  0.631
sacC
Levanase precursor.
 
  
 0.609
malL_1
Oligo-1,6-glucosidase.
   
 
 0.595
malL_2
Oligo-1,6-glucosidase.
   
 
 0.595
axeA1
Acetylxylan esterase precursor.
 
  
  0.538
FLB_13830
Cyclomaltodextrinase; Belongs to the glycosyl hydrolase 13 family.
   
 
 0.462
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.