STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
afr1,5-anhydro-D-fructose reductase. (328 aa)    
Predicted Functional Partners:
galK
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 0.812
FLB_15190
DSBA-like thioredoxin domain protein.
       0.773
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
    
  0.634
lysS
lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.604
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.593
FLB_15170
Patatin-like phospholipase.
       0.592
epsN_2
Putative pyridoxal phosphate-dependent aminotransferase EpsN.
 
 
 0.587
cobB
NAD-dependent protein deacylase; Belongs to the sirtuin family. Class III subfamily.
    
  0.570
FLB_01220
Male sterility protein.
   
 
  0.541
FLB_06440
NmrA-like family protein.
   
 
  0.541
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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