Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FLB_16640Hypothetical protein. (312 aa)    
Predicted Functional Partners:
FLB_16670
Hypothetical protein.
 
 
 0.987
mvaA
3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
 
 0.982
FLB_16630
Prenyltransferase.
 
     0.818
FLB_17360
Hypothetical protein.
 
     0.803
FLB_16650
Hypothetical protein.
       0.762
FLB_16660
Hypothetical protein.
       0.762
FLB_08200
Hypothetical protein.
  
     0.760
FLB_27440
Hypothetical protein.
  
     0.749
FLB_07110
Hypothetical protein.
  
     0.735
FLB_13190
Acyltransferase.
  
 
   0.726
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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