STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLB_18300Peptidase family M28. (335 aa)    
Predicted Functional Partners:
FLB_08130
Acyl CoA binding protein.
    
  0.923
FLB_05100
Hypothetical protein.
   
 
 0.920
udk
Uridine kinase.
   
 
  0.918
secD
Protein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.852
yheI
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI.
    
 0.805
FLB_06080
Putative multidrug export ATP-binding/permease protein.
    
 0.805
psaB_2
Photosystem I P700 chlorophyll a apoprotein A2.
       0.773
rpfC_2
Sensory/regulatory protein RpfC.
  
  
 0.757
pepN
Aminopeptidase N.
 
 
 0.757
FLB_02680
Hypothetical protein.
   
 0.710
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.