STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_3Tyrosine recombinase XerD. (419 aa)    
Predicted Functional Partners:
FLB_19160
Hypothetical protein.
 
   
 0.749
FLB_19170
Hypothetical protein.
 
     0.625
FLB_19200
Hypothetical protein.
       0.592
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.588
FLB_19830
DNA utilization protein GntX.
   
    0.547
FLB_16280
Putative efflux pump membrane fusion protein.
  
     0.438
FLB_19190
Helix-turn-helix domain protein.
     
 0.437
FLB_19180
Hypothetical protein.
       0.435
FLB_22020
Outer membrane protein.
  
     0.429
FLB_03220
Prephenate dehydrogenase.
  
    0.427
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.