STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLB_20150Hypothetical protein. (289 aa)    
Predicted Functional Partners:
sigE_1
ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.660
FLB_01310
RNA polymerase sigma factor.
  
 
 0.660
sigW_1
ECF RNA polymerase sigma factor SigW.
  
 
 0.660
sigW_2
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.660
sigW_3
ECF RNA polymerase sigma factor SigW.
  
 
 0.660
fliA
RNA polymerase sigma factor FliA; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.660
rpoE_1
ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.660
rpoE_2
ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.660
rpoE_3
ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.660
sigM
RNA polymerase sigma factor SigM.
  
 
 0.660
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.