STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLB_22130Putative metallo-hydrolase. (221 aa)    
Predicted Functional Partners:
trxA_2
Thioredoxin.
  
 0.788
ybeY
Endoribonuclease YbeY.
   
 
 0.668
pspE
Thiosulfate sulfurtransferase PspE precursor.
 
 0.649
sir
Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.640
rsmH
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
   
   0.637
FLB_12900
Y_Y_Y domain protein.
    
   0.614
FLB_25280
Y_Y_Y domain protein.
    
   0.614
glpE
Thiosulfate sulfurtransferase GlpE.
  
 0.601
acpP_1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.575
acpP_2
Acyl carrier protein.
    
 
 0.575
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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