STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hisH1Imidazole glycerol phosphate synthase subunit HisH 1. (204 aa)    
Predicted Functional Partners:
hisF
Imidazole glycerol phosphate synthase subunit HisF.
 0.999
FLB_23370
Hypothetical protein.
 
  
 0.952
purH
Bifunctional purine biosynthesis protein PurH.
    
 0.913
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
  0.897
capD
UDP-glucose 4-epimerase.
       0.783
glgA_4
Capsular glucan synthase.
  
    0.774
FLB_23390
Hypothetical protein.
       0.714
tuaD_1
UDP-glucose 6-dehydrogenase TuaD.
       0.707
FLB_23410
UDP-glucose 4-epimerase.
  
    0.701
wfgD
UDP-Glc:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-glucosyltransferase WfgD.
       0.694
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
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