STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsA1Foldase protein PrsA 1 precursor. (467 aa)    
Predicted Functional Partners:
bamA_4
Outer membrane protein assembly factor BamA precursor.
  
 
 0.782
ppiB_1
Putative peptidyl-prolyl cis-trans isomerase.
   
 0.660
ppiB_2
Putative peptidyl-prolyl cis-trans isomerase.
   
 0.660
ppiB_3
Putative peptidyl-prolyl cis-trans isomerase.
   
 0.660
ravA
ATPase RavA.
       0.626
FLB_03790
Hypothetical protein.
  
     0.623
lptD_2
LPS-assembly protein LptD.
 
  
 0.615
surA
Chaperone SurA precursor.
  
     0.610
FLB_19380
Hypothetical protein.
  
    0.608
FLB_04800
Tetratricopeptide repeat protein.
  
    0.605
Your Current Organism:
Flavobacterium succinicans
NCBI taxonomy Id: 29536
Other names: CIP 104744, Cytophaga succinicans, DSM 4002, F. succinicans, Flavobacterium sp. DD5b, Flexibacter succinicans, IFO 14905, JCM 21151, LMG 10402, LMG:10402, NBRC 14905, NCIMB 2277, strain 8
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.