Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEH13913.1 | SEH13915.1 | SAMN02745716_1397 | SAMN02745716_1398 | Hypothetical protein. | Glyoxylase, beta-lactamase superfamily II. | 0.773 |
SEH13913.1 | SEH13918.1 | SAMN02745716_1397 | SAMN02745716_1400 | Hypothetical protein. | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.661 |
SEH13913.1 | SEH13920.1 | SAMN02745716_1397 | SAMN02745716_1401 | Hypothetical protein. | Hypothetical protein. | 0.647 |
SEH13913.1 | SEH13921.1 | SAMN02745716_1397 | SAMN02745716_1402 | Hypothetical protein. | Double zinc ribbon. | 0.433 |
SEH13913.1 | clpP-2 | SAMN02745716_1397 | SAMN02745716_1395 | Hypothetical protein. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.609 |
SEH13913.1 | clpX | SAMN02745716_1397 | SAMN02745716_1396 | Hypothetical protein. | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.732 |
SEH13913.1 | valS | SAMN02745716_1397 | SAMN02745716_1399 | Hypothetical protein. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.697 |
SEH13915.1 | SEH13913.1 | SAMN02745716_1398 | SAMN02745716_1397 | Glyoxylase, beta-lactamase superfamily II. | Hypothetical protein. | 0.773 |
SEH13915.1 | SEH13918.1 | SAMN02745716_1398 | SAMN02745716_1400 | Glyoxylase, beta-lactamase superfamily II. | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.661 |
SEH13915.1 | SEH13920.1 | SAMN02745716_1398 | SAMN02745716_1401 | Glyoxylase, beta-lactamase superfamily II. | Hypothetical protein. | 0.647 |
SEH13915.1 | SEH13921.1 | SAMN02745716_1398 | SAMN02745716_1402 | Glyoxylase, beta-lactamase superfamily II. | Double zinc ribbon. | 0.433 |
SEH13915.1 | clpP-2 | SAMN02745716_1398 | SAMN02745716_1395 | Glyoxylase, beta-lactamase superfamily II. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.610 |
SEH13915.1 | clpX | SAMN02745716_1398 | SAMN02745716_1396 | Glyoxylase, beta-lactamase superfamily II. | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.732 |
SEH13915.1 | valS | SAMN02745716_1398 | SAMN02745716_1399 | Glyoxylase, beta-lactamase superfamily II. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.697 |
SEH13918.1 | SEH13913.1 | SAMN02745716_1400 | SAMN02745716_1397 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Hypothetical protein. | 0.661 |
SEH13918.1 | SEH13915.1 | SAMN02745716_1400 | SAMN02745716_1398 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Glyoxylase, beta-lactamase superfamily II. | 0.661 |
SEH13918.1 | SEH13920.1 | SAMN02745716_1400 | SAMN02745716_1401 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Hypothetical protein. | 0.757 |
SEH13918.1 | SEH13921.1 | SAMN02745716_1400 | SAMN02745716_1402 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Double zinc ribbon. | 0.561 |
SEH13918.1 | SEH13925.1 | SAMN02745716_1400 | SAMN02745716_1404 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Septum formation protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.537 |
SEH13918.1 | clpP-2 | SAMN02745716_1400 | SAMN02745716_1395 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.577 |
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