STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_00525Fumarylacetoacetate hydrolase domain containing 2A; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (282 aa)    
Predicted Functional Partners:
C481_00520
COG1414 Transcriptional regulator.
       0.623
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.540
C481_12759
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
  
 
  0.466
C481_19565
Hypothetical protein; COG0247 Fe-S oxidoreductase.
  
 
  0.459
C481_12764
Succinate dehydrogenase subunit D.
   
 
  0.445
glpC
Sn-glycerol-3-phosphate dehydrogenase subunit C; COG0247 Fe-S oxidoreductase.
   
 
  0.444
C481_12769
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
   
 
  0.441
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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