STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_00535COG3250 Beta-galactosidase/beta-glucuronidase. (1068 aa)    
Predicted Functional Partners:
C481_00540
Glycoside hydrolase family protein; COG3250 Beta-galactosidase/beta-glucuronidase.
     0.987
C481_00865
1-phosphofructokinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB).
 
  
 0.930
C481_01687
Hypothetical protein.
   
 0.871
C481_00165
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
  
  
  0.849
C481_01922
Glycoside hydrolase family 4; COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.
 
  
 0.822
C481_13959
ROK family protein; COG1940 Transcriptional regulator/sugar kinase.
 
  
 0.817
C481_03037
COG1846 Transcriptional regulators.
     
 0.785
C481_18045
Hypothetical protein; COG0457 FOG: TPR repeat.
     
 0.778
C481_05605
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
 
 0.775
C481_18620
COG1100 GTPase SAR1 and related small G proteins.
    
 0.775
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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