STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_00540Glycoside hydrolase family protein; COG3250 Beta-galactosidase/beta-glucuronidase. (550 aa)    
Predicted Functional Partners:
C481_00535
COG3250 Beta-galactosidase/beta-glucuronidase.
     0.987
C481_00195
alpha-L-arabinofuranosidase domain protein; COG3534 Alpha-L-arabinofuranosidase.
  
     0.534
C481_00165
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
  
     0.509
C481_00200
COG3533 Uncharacterized protein conserved in bacteria.
  
     0.497
C481_00600
COG3669 Alpha-L-fucosidase.
  
     0.439
C481_01025
Glycoside hydrolase family 43; COG3507 Beta-xylosidase.
  
     0.428
C481_01030
Glycoside hydrolase family 43; COG3507 Beta-xylosidase.
  
     0.406
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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