STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_00545Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins. (400 aa)    
Predicted Functional Partners:
C481_00575
AP-endonuclease/AP-lyase; COG1082 Sugar phosphate isomerases/epimerases.
 
 
 0.813
C481_00550
COG1472 Beta-glucosidase-related glycosidases.
       0.773
C481_00790
AP endonuclease, family 2 superfamily protein; COG1082 Sugar phosphate isomerases/epimerases.
 
 
 0.758
C481_10275
Xylose isomerase; COG1082 Sugar phosphate isomerases/epimerases.
 
 
 0.754
C481_00205
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
  
     0.662
C481_11824
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
  
     0.634
C481_09008
Xylose isomerase; COG1082 Sugar phosphate isomerases/epimerases.
 
 
 0.629
C481_13259
DegT/DnrJ/EryC1/StrS aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.623
C481_08998
Xylose isomerase; COG1082 Sugar phosphate isomerases/epimerases.
 
 
 0.616
C481_07151
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
  
     0.609
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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