STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_00550COG1472 Beta-glucosidase-related glycosidases. (982 aa)    
Predicted Functional Partners:
C481_00545
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
       0.773
C481_01922
Glycoside hydrolase family 4; COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.
  
  
 0.581
C481_11570
Lipolytic protein G-D-S-L family; COG2755 Lysophospholipase L1 and related esterases.
 
  
 0.578
C481_14693
Glycosidase.
   
 
 0.537
C481_08371
Glycosyl hydrolase family 32 domain protein; COG1621 Beta-fructosidases (levanase/invertase).
  
  
  0.533
C481_00555
COG3839 ABC-type sugar transport systems, ATPase components.
       0.521
C481_13959
ROK family protein; COG1940 Transcriptional regulator/sugar kinase.
    
 0.517
C481_02417
Laminarinase; COG2273 Beta-glucanase/Beta-glucan synthetase.
  
     0.504
C481_11415
Hypothetical protein.
     
 0.493
C481_01852
Ricin B lectin.
  
  
  0.484
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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