STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_00575AP-endonuclease/AP-lyase; COG1082 Sugar phosphate isomerases/epimerases. (322 aa)    
Predicted Functional Partners:
C481_07151
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
 0.825
C481_11824
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
 0.821
C481_00545
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
 0.813
C481_10270
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
 0.780
C481_00205
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
 0.766
C481_00585
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
 0.745
C481_06951
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
 0.713
C481_13219
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
 0.693
C481_01912
Oxidoreductase domain protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
 0.691
C481_00560
Extracellular solute-binding protein family 1; COG1653 ABC-type sugar transport system, periplasmic component.
 
    0.657
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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