STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_00860COG1349 Transcriptional regulators of sugar metabolism. (255 aa)    
Predicted Functional Partners:
C481_00865
1-phosphofructokinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB).
 
   
 0.929
C481_00870
PTS system fructose subfamily transporter subunit IIC; COG1299 Phosphotransferase system, fructose-specific IIC component.
 
     0.670
C481_00890
COG1445 Phosphotransferase system fructose-specific component IIB.
 
     0.610
C481_00875
COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).
 
     0.575
C481_00885
COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria).
 
     0.478
C481_00855
COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes.
       0.466
C481_00880
Phosphocarrier protein Hpr; COG1925 Phosphotransferase system, HPr-related proteins.
 
     0.464
C481_17717
COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins.
  
 
   0.421
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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