Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C481_01005COG1175 ABC-type sugar transport systems, permease components. (320 aa)    
Predicted Functional Partners:
C481_01000
COG0395 ABC-type sugar transport system, permease component.
 
 0.994
C481_11809
COG0395 ABC-type sugar transport system, permease component.
 
 0.976
C481_01010
Extracellular solute-binding protein family 1; COG1653 ABC-type sugar transport system, periplasmic component.
 
 0.975
C481_00995
COG3839 ABC-type sugar transport systems, ATPase components.
 
  
  0.963
C481_11819
Carbohydrate ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
 0.950
C481_00990
COG3839 ABC-type sugar transport systems, ATPase components.
 
  
  0.942
C481_00190
COG3839 ABC-type sugar transport systems, ATPase components.
 
  
  0.894
C481_00475
COG0395 ABC-type sugar transport system, permease component.
 
 0.894
C481_01485
ABC transporter integral membrane subunit; COG0395 ABC-type sugar transport system, permease component.
 
 0.894
C481_10260
Binding-protein-dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
 
 0.894
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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