STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_02402COG1378 Predicted transcriptional regulators. (378 aa)    
Predicted Functional Partners:
C481_04898
COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes.
   
    0.631
C481_13614
Bacterio-opsin activator HTH domain protein; COG3413 Predicted DNA binding protein.
  
     0.582
C481_00220
HpcH/HpaI aldolase; COG2301 Citrate lyase beta subunit.
  
     0.528
C481_02397
Glycoside hydrolase family 81; COG5498 Predicted glycosyl hydrolase.
       0.518
C481_05910
Rieske (2Fe-2S) domain-containing protein; COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
  
     0.501
C481_08793
Binding-protein-dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
 
     0.498
C481_19035
COG1378 Predicted transcriptional regulators.
  
   
 0.483
C481_17777
(2R)-phospho-3-sulfolactate synthase ComA.
   
    0.482
C481_01225
Bacterio-opsin activator-like protein; COG3413 Predicted DNA binding protein.
  
     0.476
C481_14194
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.475
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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