STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_02417Laminarinase; COG2273 Beta-glucanase/Beta-glucan synthetase. (618 aa)    
Predicted Functional Partners:
C481_01852
Ricin B lectin.
  
     0.614
C481_01025
Glycoside hydrolase family 43; COG3507 Beta-xylosidase.
  
     0.542
C481_01030
Glycoside hydrolase family 43; COG3507 Beta-xylosidase.
  
     0.525
C481_00550
COG1472 Beta-glucosidase-related glycosidases.
  
     0.504
C481_07146
COG1472 Beta-glucosidase-related glycosidases.
  
     0.477
C481_01932
Hypothetical protein.
  
     0.471
C481_01707
Glycoside hydrolase family 18; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
  
     0.452
C481_00975
COG1472 Beta-glucosidase-related glycosidases.
  
     0.451
C481_02447
COG1472 Beta-glucosidase-related glycosidases.
  
     0.444
C481_02412
Hypothetical protein.
       0.412
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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