Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_02427Oligopeptide/dipeptide ABC transporter, ATPase subunit; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component. (352 aa)    
Predicted Functional Partners:
C481_02432
ABC transporter integral membrane subunit; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.985
C481_18910
ABC transporter integral membrane protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.978
C481_02437
ABC transporter integral membrane subunit; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.970
C481_07561
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.969
C481_09772
Binding-protein-dependent transporters inner membrane component; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.929
C481_00945
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.922
C481_02422
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COG4608 ABC-type oligopeptide transport system, ATPase component.
 
 
0.920
C481_01807
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name.
 0.910
C481_14034
Binding-protein-dependent transport system inner membrane protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.908
C481_10490
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
    
0.884
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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