STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_02432ABC transporter integral membrane subunit; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (345 aa)    
Predicted Functional Partners:
C481_02427
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 0.985
C481_09782
COG4608 ABC-type oligopeptide transport system, ATPase component.
 0.985
C481_02437
ABC transporter integral membrane subunit; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.984
C481_18900
COG4608 ABC-type oligopeptide transport system, ATPase component.
 0.983
C481_07566
COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 0.979
C481_02422
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COG4608 ABC-type oligopeptide transport system, ATPase component.
 0.961
C481_00950
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.932
C481_01812
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name.
 0.932
C481_14039
ABC transporter permease; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.920
C481_18915
ABC transporter integral membrane protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.920
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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