STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_02437ABC transporter integral membrane subunit; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (342 aa)    
Predicted Functional Partners:
C481_02432
ABC transporter integral membrane subunit; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.974
C481_02427
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 
 
 0.962
C481_09782
COG4608 ABC-type oligopeptide transport system, ATPase component.
 
 0.960
C481_18900
COG4608 ABC-type oligopeptide transport system, ATPase component.
 
 0.958
C481_07566
COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 
 0.952
C481_02422
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COG4608 ABC-type oligopeptide transport system, ATPase component.
 
 0.936
C481_14059
Binding-protein-dependent transporters inner membrane component; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.901
C481_02442
COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 0.899
C481_00945
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.895
C481_01807
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name.
 
 0.891
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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