STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_02497D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (345 aa)    
Predicted Functional Partners:
C481_19795
Branched-chain alpha-keto acid dehydrogenase subunit E2; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
  
 
 0.806
C481_02507
COG1171 Threonine dehydratase.
  
 
 0.685
C481_04636
COG0572 Uridine kinase.
   
  0.658
C481_02502
Amidohydrolase; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.552
C481_20206
Rhodanese-like protein; COG0607 Rhodanese-related sulfurtransferase.
  
  
  0.536
C481_18395
COG0560 Phosphoserine phosphatase.
 
 0.494
rpl6p
50S ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.489
trpA
Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.480
C481_04666
COG0607 Rhodanese-related sulfurtransferase.
     
  0.468
C481_19991
Rhodanese-like protein; COG0607 Rhodanese-related sulfurtransferase.
     
  0.468
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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