STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_02497D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (345 aa)    
Predicted Functional Partners:
C481_05320
Haloacid dehalogenase; COG0546 Predicted phosphatases.
 
  
 0.784
C481_10220
COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
  
 
 0.759
C481_18825
HAD-superfamily hydrolase; COG0546 Predicted phosphatases.
 
  
 0.755
C481_20206
Rhodanese-like protein; COG0607 Rhodanese-related sulfurtransferase.
  
  
  0.705
C481_02507
COG1171 Threonine dehydratase.
  
 
 0.686
C481_00325
Hydroxypyruvate reductase; COG2379 Putative glycerate kinase.
  
 0.682
C481_01842
Hydroxypyruvate reductase; COG2379 Putative glycerate kinase.
  
 0.682
C481_19125
COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
  
 
 0.676
C481_04636
COG0572 Uridine kinase.
   
  0.617
rpl6p
50S ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.581
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.